Transcript: ENSMUST00000332806.1 3110053B16Rik-208

Description

RIKEN cDNA 3110053B16 gene [Source:MGI Symbol;Acc:MGI:1920435]

Location

Chromosome 12: 20,923,364-20,971,063 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 3152 variant alleles and maps to 221 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000121318.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000144811.3	3110053B16Rik-205	1944	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000140360.8	3110053B16Rik-203	2004	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000208744.3	3110053B16Rik-206	1851	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000332987.1	3110053B16Rik-211	1830	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000332989.1	3110053B16Rik-213	1768	No protein	-	lncRNA	-
ENSMUST00000332807.1	3110053B16Rik-209	1646	No protein	-	lncRNA	-
ENSMUST00000332991.1	3110053B16Rik-215	1640	No protein	-	lncRNA	-
ENSMUST00000332998.1	3110053B16Rik-222	1631	No protein	-	lncRNA	-
ENSMUST00000332806.1	3110053B16Rik-208	1603	No protein	-	lncRNA	-
ENSMUST00000332990.1	3110053B16Rik-214	1553	No protein	-	lncRNA	-
ENSMUST00000332988.1	3110053B16Rik-212	1524	No protein	-	lncRNA	-
ENSMUST00000332805.1	3110053B16Rik-207	1503	No protein	-	lncRNA	-
ENSMUST00000332999.1	3110053B16Rik-223	1316	No protein	-	lncRNA	-
ENSMUST00000332994.1	3110053B16Rik-218	1061	No protein	-	lncRNA	-
ENSMUST00000332995.1	3110053B16Rik-219	1047	No protein	-	lncRNA	-
ENSMUST00000332993.1	3110053B16Rik-217	1028	No protein	-	lncRNA	-
ENSMUST00000332992.1	3110053B16Rik-216	1013	No protein	-	lncRNA	-
ENSMUST00000332996.1	3110053B16Rik-220	1010	No protein	-	lncRNA	-
ENSMUST00000333001.1	3110053B16Rik-225	960	No protein	-	lncRNA	-
ENSMUST00000143905.3	3110053B16Rik-204	957	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000332997.1	3110053B16Rik-221	906	No protein	-	lncRNA	-
ENSMUST00000333005.1	3110053B16Rik-229	898	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000333006.1	3110053B16Rik-230	839	No protein	-	lncRNA	-
ENSMUST00000332808.1	3110053B16Rik-210	838	No protein	-	lncRNA	-
ENSMUST00000333003.1	3110053B16Rik-227	803	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000333000.1	3110053B16Rik-224	783	No protein	-	lncRNA	-
ENSMUST00000333004.1	3110053B16Rik-228	718	No protein	-	lncRNA	-
ENSMUST00000127917.2	3110053B16Rik-202	676	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000333002.1	3110053B16Rik-226	650	No protein	-	lncRNA	-
ENSMUST00000333007.1	3110053B16Rik-231	570	No protein	-	lncRNA	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,603 bps,

Version

ENSMUST00000332806.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000332806.1 3110053B16Rik-208

Summary

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Transcript: ENSMUST00000332806.1 3110053B16Rik-208

Summary

About Us

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