Transcript: ENSMUST00000239513.1 Lin54-202

Description

lin-54 DREAM MuvB core complex component [Source:MGI Symbol;Acc:MGI:2140902]

Location

Chromosome 5: 100,589,901-100,646,432 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 12 domains and features, is associated with 2965 variant alleles and maps to 244 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000118665.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239513.1	Lin54-202	4587	749aa	ENSMUSP00000159392.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19462	Q571G4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000239512.1	Lin54-201	4451	749aa	ENSMUSP00000159391.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19462	Q571G4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000239514.1	Lin54-203	3865	98aa	ENSMUSP00000159393.2	Nonsense mediated decay		A0A7P0A153	-
ENSMUST00000239515.1	Lin54-204	1791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 4,587 bps, Translation length: 749 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q571G4

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19462

Version

ENSMUST00000239513.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000239513.1 Lin54-202

Summary

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Transcript: ENSMUST00000239513.1 Lin54-202

Summary

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