Transcript: ENSMUST00000239388.2 Glra3-203

Description

glycine receptor, alpha 3 subunit [Source:MGI Symbol;Acc:MGI:95749]

Location

Chromosome 8: 56,393,860-56,578,387 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 41 domains and features, is associated with 9937 variant alleles and maps to 152 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038257.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000000275.10	Glra3-201	6508	464aa	ENSMUSP00000000275.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5E811 Q91XP5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000239388.2	Glra3-203	1474	480aa	ENSMUSP00000159349.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40340	G5E811	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000164020.2	Glra3-202	3586	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,474 bps, Translation length: 480 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS40340

Version

ENSMUST00000239388.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000239388.2 Glra3-203

Summary

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Transcript: ENSMUST00000239388.2 Glra3-203

Summary

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