Transcript: ENSMUST00000239323.2 Pou3f3-202

Description

POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]

Gene Synonyms

Brn-1, Brn1, HST011, Otf8, urehr2

Location

Chromosome 1: 42,734,085-42,742,336 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 39 domains and features, is associated with 766 variant alleles and maps to 360 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000045515.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000054883.4	Pou3f3-201	7409	497aa	ENSMUSP00000052088.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14917	P31361	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000239323.2	Pou3f3-202	7330	497aa	ENSMUSP00000159226.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14917	P31361	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 4, Coding exons: 1, Transcript length: 7,330 bps, Translation length: 497 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P31361

CCDS

This transcript is a member of the Mouse CCDS set: CCDS14917

Version

ENSMUST00000239323.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred exon combination [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000239323.2 Pou3f3-202

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Transcript: ENSMUST00000239323.2 Pou3f3-202

Summary

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