Transcript: ENSMUST00000237871.2 Tm9sf3-202

Description

transmembrane 9 superfamily member 3 [Source:MGI Symbol;Acc:MGI:1914262]

Gene Synonyms

1810073M23Rik, 2810031D16Rik, Smbp

Location

Chromosome 19: 41,202,231-41,252,419 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 15 domains and features, is associated with 2738 variant alleles and maps to 379 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000025016.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000237871.2	Tm9sf3-202	3170	587aa	ENSMUSP00000158318.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29808	Q9ET30	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000025989.10	Tm9sf3-201	8096	584aa	ENSMUSP00000025989.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A498WGK6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 3,170 bps, Translation length: 587 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9ET30

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29808

Version

ENSMUST00000237871.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000237871.2 Tm9sf3-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000237871.2 Tm9sf3-202

Summary

About Us

Get help

Our sister sites

Follow us