Transcript: ENSMUST00000237863.2 Rela-205

Description

v-rel reticuloendotheliosis viral oncogene homolog A (avian) [Source:MGI Symbol;Acc:MGI:103290]

Gene Synonyms

p65, p65 NF kappaB

Location

Chromosome 19: 5,687,987-5,688,724 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 16 domains and features, is associated with 513 variant alleles and maps to 35 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024927.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025867.6	Rela-201	2716	549aa	ENSMUSP00000025867.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29473	Q04207-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237863.2	Rela-205	363	67aa	ENSMUSP00000157385.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B901	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000238000.2	Rela-206	2063	348aa	ENSMUSP00000157934.2	Nonsense mediated decay		A0A494BA44	-
ENSMUST00000237838.2	Rela-204	1571	121aa	ENSMUSP00000158430.2	Nonsense mediated decay		Q4U113	-
ENSMUST00000238126.2	Rela-207	728	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000236300.2	Rela-202	311	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000237361.2	Rela-203	786	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 363 bps, Translation length: 67 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSMUST00000237863.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000237863.2 Rela-205

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Transcript: ENSMUST00000237863.2 Rela-205

Summary

About Us

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