Transcript: ENSMUST00000235983.2 Best1-203

Description

bestrophin 1 [Source:MGI Symbol;Acc:MGI:1346332]

Gene Synonyms

Vmd2, best macular dystrophy, mBest1

Location

Chromosome 19: 9,964,197-9,975,934 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 18 domains and features, is associated with 1292 variant alleles and maps to 151 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000037418.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000117346.2	Best1-201	2080	551aa	ENSMUSP00000113053.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29568	O88870	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000235983.2	Best1-203	1725	420aa	ENSMUSP00000157419.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B8Z9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000144273.2	Best1-202	301	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,725 bps, Translation length: 420 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSMUST00000235983.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

alternative 5' UTR [Definitions]

not organism-supported

Transcript: ENSMUST00000235983.2 Best1-203

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Transcript: ENSMUST00000235983.2 Best1-203

Summary

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