Transcript: ENSMUST00000235748.2 Wdr55-202

Description

WD repeat domain 55 [Source:MGI Symbol;Acc:MGI:1915186]

Gene Synonyms

2410080P20Rik

Location

Chromosome 18: 36,895,711-36,896,196 forward strand.

About this transcript

This transcript has 3 exons, is associated with 534 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000042660.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000049323.9	Wdr55-201	1619	388aa	ENSMUSP00000039010.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29162	Q9CX97	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235748.2	Wdr55-202	332	46aa	ENSMUSP00000157945.2	Nonsense mediated decay		A0A494BA55	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000236324.2	Wdr55-203	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 332 bps, Translation length: 46 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000235748.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000235748.2 Wdr55-202

Summary

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Transcript: ENSMUST00000235748.2 Wdr55-202

Summary

About Us

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