Transcript: ENSMUST00000235606.2 Prelid2-202

Description

PRELI domain containing 2 [Source:MGI Symbol;Acc:MGI:1924869]

Gene Synonyms

1700003A01Rik, C330008K14Rik

Location

Chromosome 18: 42,008,665-42,084,307 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 3 domains and features, is associated with 4186 variant alleles and maps to 167 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000056671.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000235606.2	Prelid2-202	868	177aa	ENSMUSP00000157706.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37794	Q0VBB0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000070949.6	Prelid2-201	651	174aa	ENSMUSP00000064661.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZN63	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000236542.2	Prelid2-203	482	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 868 bps, Translation length: 177 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q0VBB0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37794

Version

ENSMUST00000235606.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000235606.2 Prelid2-202

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Transcript: ENSMUST00000235606.2 Prelid2-202

Summary

About Us

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