Transcript: ENSMUST00000234674.2 Nubp2-211

Description

nucleotide binding protein 2 [Source:MGI Symbol;Acc:MGI:1347072]

Gene Synonyms

D17Wsu11e

Location

Chromosome 17: 25,101,586-25,104,888 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 668 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039183.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000044252.7	Nubp2-201	1427	275aa	ENSMUSP00000049319.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28500	Q9R061	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234968.2	Nubp2-214	1502	245aa	ENSMUSP00000157175.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EGU9	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000234928.2	Nubp2-213	1471	211aa	ENSMUSP00000157378.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EH93	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000234597.2	Nubp2-209	1434	211aa	ENSMUSP00000157064.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EH93	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000234598.2	Nubp2-210	1168	189aa	ENSMUSP00000157118.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EGB1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000234583.2	Nubp2-208	899	251aa	ENSMUSP00000157034.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L2S1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000234579.2	Nubp2-207	1445	61aa	ENSMUSP00000157158.2	Nonsense mediated decay		A0A3Q4L2Y0	-
ENSMUST00000234489.2	Nubp2-206	1423	133aa	ENSMUSP00000157348.2	Nonsense mediated decay		A0A3Q4EIH1	-
ENSMUST00000234674.2	Nubp2-211	1393	64aa	ENSMUSP00000157349.2	Nonsense mediated decay		A0A3Q4EGS2	-
ENSMUST00000234352.2	Nubp2-205	1224	50aa	ENSMUSP00000157112.2	Nonsense mediated decay		A0A3Q4EGA7	-
ENSMUST00000234261.2	Nubp2-203	1221	65aa	ENSMUSP00000157043.2	Nonsense mediated decay		A0A3Q4EBU9	-
ENSMUST00000234293.2	Nubp2-204	1191	46aa	ENSMUSP00000157234.2	Nonsense mediated decay		A0A3Q4L320	-
ENSMUST00000235055.2	Nubp2-215	950	58aa	ENSMUSP00000157236.2	Nonsense mediated decay		A0A3Q4EC31	-
ENSMUST00000234098.2	Nubp2-202	1440	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000234915.2	Nubp2-212	649	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 1,393 bps, Translation length: 64 residues

Version

ENSMUST00000234674.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000234674.2 Nubp2-211

Summary

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Transcript: ENSMUST00000234674.2 Nubp2-211

Summary

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