Transcript: ENSMUST00000234432.2 Yipf4-202

Description

Yip1 domain family, member 4 [Source:MGI Symbol;Acc:MGI:1915114]

Gene Synonyms

2310034L04Rik

Location

Chromosome 17: 74,796,545-74,806,955 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 1 domain and feature, is associated with 1438 variant alleles and maps to 259 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024072.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000024873.7	Yipf4-201	2133	246aa	ENSMUSP00000024873.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28971	Q8C407-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234432.2	Yipf4-202	1991	39aa	ENSMUSP00000157350.2	Nonsense mediated decay		A0A3Q4L376	-
ENSMUST00000234448.2	Yipf4-203	1082	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000234939.2	Yipf4-205	481	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000235064.2	Yipf4-206	343	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000234853.2	Yipf4-204	166	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 7, Coding exons: 2, Transcript length: 1,991 bps, Translation length: 39 residues

Version

ENSMUST00000234432.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000234432.2 Yipf4-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000234432.2 Yipf4-202

Summary

About Us

Get help

Our sister sites

Follow us