Transcript: ENSMUST00000234051.2 Vmn2r114-202

Description

vomeronasal 2, receptor 114 [Source:MGI Symbol;Acc:MGI:3648252]

Gene Synonyms

EG666002

Location

Chromosome 17: 23,504,366-23,531,402 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 2652 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091945.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000168033.3	Vmn2r114-201	8228	856aa	ENSMUSP00000127505.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50007	E9Q281	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234051.2	Vmn2r114-202	13307	577aa	ENSMUSP00000157104.2	Nonsense mediated decay		A0A3Q4EBX4	-
ENSMUST00000234493.2	Vmn2r114-203	11539	577aa	ENSMUSP00000157375.2	Nonsense mediated decay		A0A3Q4EBX4	-
ENSMUST00000234738.2	Vmn2r114-204	9798	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 13,307 bps, Translation length: 577 residues

Version

ENSMUST00000234051.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

Transcript: ENSMUST00000234051.2 Vmn2r114-202

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Transcript: ENSMUST00000234051.2 Vmn2r114-202

Summary

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