Transcript: ENSMUST00000233599.2 Vmn2r18-203

Description

vomeronasal 2, receptor 18 [Source:MGI Symbol;Acc:MGI:3645314]

Gene Synonyms

EG632671

Location

Chromosome 5: 151,484,655-151,529,486 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 55 domains and features, is associated with 2382 variant alleles and maps to 98 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091794.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSMUST00000233599.2	Vmn2r18-203	3341	871aa	ENSMUSP00000156703.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B2WB67	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSMUST00000240714.1	Vmn2r18-205	3317	863aa	ENSMUSP00000159507.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V5KY92	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000232905.2	Vmn2r18-202	3113	795aa	ENSMUSP00000156470.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B2WCD9	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000233687.2	Vmn2r18-204	4841	478aa	ENSMUSP00000156670.2	Nonsense mediated decay	A0A3B2W3Z9	-
ENSMUST00000232853.2	Vmn2r18-201	3532	182aa	ENSMUSP00000156972.2	Nonsense mediated decay	A0A3B2WDC6	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,341 bps, Translation length: 871 residues

Version

ENSMUST00000233599.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000233599.2 Vmn2r18-203

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Transcript: ENSMUST00000233599.2 Vmn2r18-203

Summary

About Us

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