Transcript: ENSMUST00000233240.2 Vmn2r83-203

Description

vomeronasal 2, receptor 83 [Source:MGI Symbol;Acc:MGI:3644559]

Gene Synonyms

EG625029

Location

Chromosome 10: 79,304,565-79,329,419 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 1364 variant alleles and maps to 70 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091381.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000167976.4	Vmn2r83-201	4145	864aa	ENSMUSP00000131426.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48618	E9Q0G7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233065.2	Vmn2r83-202	3638	659aa	ENSMUSP00000156866.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WBG2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000233629.2	Vmn2r83-204	4089	70aa	ENSMUSP00000156663.2	Nonsense mediated decay		A0A3B2W7Q7	-
ENSMUST00000233849.2	Vmn2r83-205	4024	442aa	ENSMUSP00000156909.2	Nonsense mediated decay		A0A3B2WD89	-
ENSMUST00000233240.2	Vmn2r83-203	3517	237aa	ENSMUSP00000156717.2	Nonsense mediated decay		A0A3B2WB78	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 3,517 bps, Translation length: 237 residues

Version

ENSMUST00000233240.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

Transcript: ENSMUST00000233240.2 Vmn2r83-203

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Transcript: ENSMUST00000233240.2 Vmn2r83-203

Summary

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