Transcript: ENSMUST00000233177.2 Vmn2r58-205

Description

vomeronasal 2, receptor 58 [Source:MGI Symbol;Acc:MGI:3647877]

Gene Synonyms

EG628422

Location

Chromosome 7: 41,485,238-41,522,136 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 4561 variant alleles and maps to 203 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000090383.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000171671.3	Vmn2r58-201	3698	862aa	ENSMUSP00000126966.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52212	K7N6V2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233081.2	Vmn2r58-203	3574	517aa	ENSMUSP00000156803.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WD23	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000233147.2	Vmn2r58-204	4085	72aa	ENSMUSP00000156405.2	Nonsense mediated decay		A0A3B2W3G0	-
ENSMUST00000233389.2	Vmn2r58-206	3957	91aa	ENSMUSP00000156834.2	Nonsense mediated decay		A0A3B2WBE4	-
ENSMUST00000233177.2	Vmn2r58-205	3874	524aa	ENSMUSP00000156783.2	Nonsense mediated decay		A0A3B2W7Z5	-
ENSMUST00000233957.2	Vmn2r58-207	3826	72aa	ENSMUSP00000156760.2	Nonsense mediated decay		A0A3B2W3G0	-
ENSMUST00000232976.2	Vmn2r58-202	2587	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 3,874 bps, Translation length: 524 residues

Version

ENSMUST00000233177.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

Transcript: ENSMUST00000233177.2 Vmn2r58-205

Summary

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Transcript: ENSMUST00000233177.2 Vmn2r58-205

Summary

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