Transcript: ENSMUST00000233033.2 Vmn2r78-203

Description

vomeronasal 2, receptor 78 [Source:MGI Symbol;Acc:MGI:3761335]

Location

Chromosome 7: 86,564,302-86,576,714 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 29 domains and features, is associated with 1504 variant alleles and maps to 81 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091962.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000170835.4	Vmn2r78-201	2952	853aa	ENSMUSP00000126698.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52302	K7N6U5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233033.2	Vmn2r78-203	5346	563aa	ENSMUSP00000156510.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WAT8	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000233868.2	Vmn2r78-204	6054	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000232924.2	Vmn2r78-202	3660	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 5,346 bps, Translation length: 563 residues

Version

ENSMUST00000233033.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000233033.2 Vmn2r78-203

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Transcript: ENSMUST00000233033.2 Vmn2r78-203

Summary

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