Transcript: ENSMUST00000231457.2 Vmn2r94-203

Description

vomeronasal 2, receptor 94 [Source:MGI Symbol;Acc:MGI:3648050]

Gene Synonyms

EG665227

Location

Chromosome 17: 18,461,384-18,498,018 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 1 domain and feature, is associated with 2769 variant alleles and maps to 118 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000090417.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000172190.4	Vmn2r94-201	5153	818aa	ENSMUSP00000126386.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49971	E9PZK8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000231815.3	Vmn2r94-204	9423	469aa	ENSMUSP00000156288.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P793	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000231457.2	Vmn2r94-203	5538	41aa	ENSMUSP00000155968.2	Nonsense mediated decay		A0A338P6T7	-
ENSMUST00000231390.2	Vmn2r94-202	3783	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 2, Transcript length: 5,538 bps, Translation length: 41 residues

Version

ENSMUST00000231457.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

Transcript: ENSMUST00000231457.2 Vmn2r94-203

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Transcript: ENSMUST00000231457.2 Vmn2r94-203

Summary

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