Transcript: ENSMUST00000231417.2 Gmnc-203

Description

geminin coiled-coil domain containing [Source:MGI Symbol;Acc:MGI:2685452]

Gene Synonyms

Gm606, LOC239789, LOC385639

Location

Chromosome 16: 26,732,303-26,784,356 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 1 domain and feature, is associated with 3281 variant alleles and maps to 42 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000068428.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000089832.6	Gmnc-201	4084	339aa	ENSMUSP00000087269.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37304	Q3URY2-2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231969.2	Gmnc-204	2553	333aa	ENSMUSP00000156070.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3URY2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000231299.2	Gmnc-202	2284	291aa	ENSMUSP00000156264.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3URY2-3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000231417.2	Gmnc-203	1243	110aa	ENSMUSP00000155982.2	Nonsense mediated decay		A0A338P6G5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 5, Transcript length: 1,243 bps, Translation length: 110 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000231417.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENSMUST00000231417.2 Gmnc-203

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Transcript: ENSMUST00000231417.2 Gmnc-203

Summary

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