Transcript: ENSMUST00000229683.2 Khdrbs3-204

Description

KH domain containing, RNA binding, signal transduction associated 3 [Source:MGI Symbol;Acc:MGI:1313312]

Gene Synonyms

Etle, SLM-2, Salp, T-STAR

Location

Chromosome 15: 68,800,281-68,973,060 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 1 domain and feature, is associated with 9357 variant alleles and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022332.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022954.7	Khdrbs3-201	1887	346aa	ENSMUSP00000022954.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27513	Q9R226	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230847.2	Khdrbs3-206	1344	258aa	ENSMUSP00000154871.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VJR4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000230073.2	Khdrbs3-205	501	126aa	ENSMUSP00000155218.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHM1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229234.2	Khdrbs3-202	2861	346aa	ENSMUSP00000154887.2	Nonsense mediated decay	CCDS27513	Q9R226	-
ENSMUST00000229683.2	Khdrbs3-204	1740	346aa	ENSMUSP00000155136.2	Nonsense mediated decay	CCDS27513	Q9R226	-
ENSMUST00000229534.2	Khdrbs3-203	688	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 11, Coding exons: 9, Transcript length: 1,740 bps, Translation length: 346 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9R226

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27513

Version

ENSMUST00000229683.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000229683.2 Khdrbs3-204

Summary

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Transcript: ENSMUST00000229683.2 Khdrbs3-204

Summary

About Us

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