Transcript: ENSMUST00000229571.2 Naprt-202

Description

nicotinate phosphoribosyltransferase [Source:MGI Symbol;Acc:MGI:2442664]

Gene Synonyms

9130210N20Rik, Naprt1

Location

Chromosome 15: 75,762,812-75,766,139 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 1 domain and feature, is associated with 543 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022574.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023237.8	Naprt-201	1898	538aa	ENSMUSP00000023237.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27552	Q8CC86	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000229571.2	Naprt-202	1615	344aa	ENSMUSP00000155290.2	Nonsense mediated decay		A0A2R8VHP2	-
ENSMUST00000230259.2	Naprt-203	741	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000230739.2	Naprt-204	489	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 12, Coding exons: 8, Transcript length: 1,615 bps, Translation length: 344 residues

Version

ENSMUST00000229571.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENSMUST00000229571.2 Naprt-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000229571.2 Naprt-202

Summary

About Us

Get help

Our sister sites

Follow us