Transcript: ENSMUST00000229084.2 Slc48a1-203

Description

solute carrier family 48 (heme transporter), member 1 [Source:MGI Symbol;Acc:MGI:1914989]

Gene Synonyms

4930570C03Rik

Location

Chromosome 15: 97,682,370-97,689,128 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 11 domains and features, is associated with 829 variant alleles and maps to 95 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000081534.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000117892.2	Slc48a1-201	2536	146aa	ENSMUSP00000112644.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49715	Q9D8M3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000229084.2	Slc48a1-203	789	88aa	ENSMUSP00000155411.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHT5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000135073.2	Slc48a1-202	404	60aa	ENSMUSP00000122485.2	Nonsense mediated decay		D6RG96	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000230531.2	Slc48a1-204	702	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 789 bps, Translation length: 88 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000229084.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000229084.2 Slc48a1-203

Summary

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Transcript: ENSMUST00000229084.2 Slc48a1-203

Summary

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