Transcript: ENSMUST00000228389.2 Vmn1r216-202

Description

vomeronasal 1 receptor 216 [Source:MGI Symbol;Acc:MGI:2159696]

Gene Synonyms

V1ri10

Location

Chromosome 13: 23,281,146-23,292,902 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 27 domains and features, is associated with 882 variant alleles and maps to 112 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000115697.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000228389.2	Vmn1r216-202	10213	298aa	ENSMUSP00000153724.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26331	Q8R257	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000228802.2	Vmn1r216-203	7448	298aa	ENSMUSP00000153991.2	Nonsense mediated decay	CCDS26331	Q8R257	-
ENSMUST00000227317.2	Vmn1r216-201	8838	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 10,213 bps, Translation length: 298 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26331

Version

ENSMUST00000228389.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

alternative 3' UTR [Definitions]

inferred transcript model

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000228389.2 Vmn1r216-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000228389.2 Vmn1r216-202

Summary

About Us

Get help

Our sister sites

Follow us