Transcript: ENSMUST00000228072.2 Scaf11-204

Description

SR-related CTD-associated factor 11 [Source:MGI Symbol;Acc:MGI:1919443]

Gene Synonyms

1110061H03Rik, 2610510E10Rik, CASP11, SIP1, SRRP129, Sfrs2ip, Srsf2ip

Location

Chromosome 15: 96,309,580-96,316,573 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 18 domains and features, is associated with 798 variant alleles and maps to 385 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000033228.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000047835.8	Scaf11-201	5766	1456aa	ENSMUSP00000044898.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37186	E9PZM7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000228072.2	Scaf11-204	4519	476aa	ENSMUSP00000154674.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BRQ7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000228535.2	Scaf11-206	696	232aa	ENSMUSP00000154368.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQX1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000227069.2	Scaf11-202	4829	1389aa	ENSMUSP00000154321.2	Nonsense mediated decay		A0A2I3BQU5	-
ENSMUST00000228260.2	Scaf11-205	796	84aa	ENSMUSP00000154059.2	Nonsense mediated decay		A0A2I3BQ68	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000227133.2	Scaf11-203	2599	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 4,519 bps, Translation length: 476 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000228072.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000228072.2 Scaf11-204

Summary

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Transcript: ENSMUST00000228072.2 Scaf11-204

Summary

About Us

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