Transcript: ENSMUST00000227556.3 Lmbrd2-204

Description

LMBR1 domain containing 2 [Source:MGI Symbol;Acc:MGI:2444173]

Gene Synonyms

9930036E21Rik

Location

Chromosome 15: 9,140,637-9,202,569 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 19 domains and features, is associated with 3148 variant alleles and maps to 307 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039704.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000227556.3	Lmbrd2-204	8098	694aa	ENSMUSP00000154020.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37039	Q8C561	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000090380.6	Lmbrd2-201	3210	649aa	ENSMUSP00000087858.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8C561-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000226149.2	Lmbrd2-202	621	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000227216.2	Lmbrd2-203	763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 8,098 bps, Translation length: 694 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8C561

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37039

Version

ENSMUST00000227556.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000227556.3 Lmbrd2-204

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Transcript: ENSMUST00000227556.3 Lmbrd2-204

Summary

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