Transcript: ENSMUST00000227350.2 Tgds-202

Description

TDP-glucose 4,6-dehydratase [Source:MGI Symbol;Acc:MGI:1923605]

Gene Synonyms

2610017J16Rik, 2610025M23Rik

Location

Chromosome 14: 118,349,323-118,370,156 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 1 domain and feature, is associated with 1966 variant alleles and maps to 213 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022130.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022727.10	Tgds-201	1682	355aa	ENSMUSP00000022727.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27332	Q8VDR7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228543.2	Tgds-204	1594	343aa	ENSMUSP00000154426.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9D0D1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000227350.2	Tgds-202	2153	95aa	ENSMUSP00000153859.2	Nonsense mediated decay		A0A2I3BPN7	-
ENSMUST00000228085.2	Tgds-203	350	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 11, Coding exons: 4, Transcript length: 2,153 bps, Translation length: 95 residues

Version

ENSMUST00000227350.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000227350.2 Tgds-202

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Transcript: ENSMUST00000227350.2 Tgds-202

Summary

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