Transcript: ENSMUST00000226303.2 Styx-202

Description

serine/threonine/tyrosine interaction protein [Source:MGI Symbol;Acc:MGI:1891150]

Gene Synonyms

0610039A20Rik, STNS (alternatively spliced intron of Styx)

Location

Chromosome 14: 45,588,679-45,611,758 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 1 domain and feature, is associated with 1362 variant alleles and maps to 264 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000053205.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000226873.2	Styx-205	12974	223aa	ENSMUSP00000153854.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26975	Q60969-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000228818.2	Styx-209	451	66aa	ENSMUSP00000154485.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BRI3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000226785.2	Styx-204	4168	55aa	ENSMUSP00000154662.2	Nonsense mediated decay		A0A2I3BRP4	-
ENSMUST00000228311.2	Styx-207	2107	223aa	ENSMUSP00000154148.2	Nonsense mediated decay	CCDS26975	Q60969-1	-
ENSMUST00000226603.2	Styx-203	1889	115aa	ENSMUSP00000154323.2	Nonsense mediated decay		Q5U4H6	-
ENSMUST00000226303.2	Styx-202	1730	52aa	ENSMUSP00000154228.2	Nonsense mediated decay		A0A2I3BQL4	-
ENSMUST00000111835.4	Styx-201	1245	205aa	ENSMUSP00000107466.4	Nonsense mediated decay		A0A2K6EDL3	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228321.2	Styx-208	1267	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000227538.2	Styx-206	385	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 12, Coding exons: 4, Transcript length: 1,730 bps, Translation length: 52 residues

Version

ENSMUST00000226303.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000226303.2 Styx-202

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Transcript: ENSMUST00000226303.2 Styx-202

Summary

About Us

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