Transcript: ENSMUST00000226039.2 Trim38-203

Description

tripartite motif-containing 38 [Source:MGI Symbol;Acc:MGI:2684869]

Gene Synonyms

LOC214158

Location

Chromosome 13: 23,953,896-23,975,511 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 29 domains and features, is associated with 1839 variant alleles and maps to 92 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000064140.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000226039.2	Trim38-203	1999	471aa	ENSMUSP00000153240.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26370	Q5SZ99	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000074067.4	Trim38-201	1480	471aa	ENSMUSP00000073709.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26370	Q5SZ99	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000223911.2	Trim38-202	1457	249aa	ENSMUSP00000153540.2	Nonsense mediated decay		A0A286YDR5	-

Summary

Statistics

Exons: 10, Coding exons: 6, Transcript length: 1,999 bps, Translation length: 471 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5SZ99

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26370

Version

ENSMUST00000226039.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

dotter confirmed [Definitions]

inferred transcript model

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000226039.2 Trim38-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000226039.2 Trim38-203

Summary

About Us

Get help

Our sister sites

Follow us