Transcript: ENSMUST00000224188.3 Hmgcs1-202

Description

3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 [Source:MGI Symbol;Acc:MGI:107592]

Gene Synonyms

B130032C06Rik

Location

Chromosome 13: 120,152,000-120,169,796 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 12 domains and features, is associated with 1487 variant alleles and maps to 353 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000093930.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000179869.3	Hmgcs1-201	3245	520aa	ENSMUSP00000136944.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56901	Q8JZK9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000224188.3	Hmgcs1-202	3464	537aa	ENSMUSP00000153064.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8JZK9	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000225543.2	Hmgcs1-203	356	17aa	ENSMUSP00000153212.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDE3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000226092.2	Hmgcs1-204	1747	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 3,464 bps, Translation length: 537 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8JZK9

Version

ENSMUST00000224188.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

alternative 5' UTR [Definitions]

non-ATG start

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000224188.3 Hmgcs1-202

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Transcript: ENSMUST00000224188.3 Hmgcs1-202

Summary

About Us

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