Transcript: ENSMUST00000222310.2 Ccdc85c-202

Description

coiled-coil domain containing 85C [Source:MGI Symbol;Acc:MGI:3644008]

Gene Synonyms

Gm9010, hhy

Location

Chromosome 12: 108,169,861-108,241,684 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 15 domains and features, is associated with 4820 variant alleles and maps to 183 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000084883.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000136175.3	Ccdc85c-201	1302	433aa	ENSMUSP00000125757.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A217FL83	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000222310.2	Ccdc85c-202	4298	420aa	ENSMUSP00000152421.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49166	E9Q6B2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 4,298 bps, Translation length: 420 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: E9Q6B2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49166

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000222310.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

inferred exon combination [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000222310.2 Ccdc85c-202

Summary

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Transcript: ENSMUST00000222310.2 Ccdc85c-202

Summary

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