Transcript: ENSMUST00000208547.4 E230029C05Rik-206

Description

RIKEN cDNA E230029C05 gene [Source:MGI Symbol;Acc:MGI:2442580]

Gene Synonyms

Gm26529, Gm32094

Location

Chromosome 7: 89,678,293-89,698,299 forward strand.

About this transcript

This transcript has 6 exons, is associated with 1592 variant alleles and maps to 97 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000097585.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000293457.1	E230029C05Rik-248	487	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000208362.3	E230029C05Rik-205	2477	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000207458.2	E230029C05Rik-202	2445	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000244763.2	E230029C05Rik-232	2195	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000208028.4	E230029C05Rik-203	2166	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000293571.1	E230029C05Rik-361	1892	No protein	-	lncRNA	-
ENSMUST00000293560.1	E230029C05Rik-350	1669	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293459.1	E230029C05Rik-250	1373	No protein	-	lncRNA	-
ENSMUST00000293460.1	E230029C05Rik-251	1356	No protein	-	lncRNA	-
ENSMUST00000293549.1	E230029C05Rik-339	1268	No protein	-	lncRNA	-
ENSMUST00000293561.1	E230029C05Rik-351	1212	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293554.1	E230029C05Rik-344	1179	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293544.1	E230029C05Rik-334	1151	No protein	-	lncRNA	-
ENSMUST00000181784.2	E230029C05Rik-201	1100	No protein	-	lncRNA	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000293461.1	E230029C05Rik-252	1073	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293477.1	E230029C05Rik-267	1063	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293482.1	E230029C05Rik-272	1036	No protein	-	lncRNA	-
ENSMUST00000293545.1	E230029C05Rik-335	1028	No protein	-	lncRNA	-
ENSMUST00000293546.1	E230029C05Rik-336	1024	No protein	-	lncRNA	-
ENSMUST00000244679.2	E230029C05Rik-231	1020	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293547.1	E230029C05Rik-337	1019	No protein	-	lncRNA	-
ENSMUST00000293548.1	E230029C05Rik-338	1011	No protein	-	lncRNA	-
ENSMUST00000293480.1	E230029C05Rik-270	1002	No protein	-	lncRNA	-
ENSMUST00000293506.1	E230029C05Rik-296	991	No protein	-	lncRNA	-
ENSMUST00000244006.2	E230029C05Rik-226	975	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293497.1	E230029C05Rik-287	970	No protein	-	lncRNA	-
ENSMUST00000245051.1	E230029C05Rik-236	969	No protein	-	lncRNA	-
ENSMUST00000245744.2	E230029C05Rik-244	967	No protein	-	lncRNA	-
ENSMUST00000245386.1	E230029C05Rik-239	965	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293458.1	E230029C05Rik-249	955	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243467.2	E230029C05Rik-219	951	No protein	-	lncRNA	-
ENSMUST00000293516.1	E230029C05Rik-306	944	No protein	-	lncRNA	-
ENSMUST00000241086.2	E230029C05Rik-207	943	No protein	-	lncRNA	-
ENSMUST00000293559.1	E230029C05Rik-349	943	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293485.1	E230029C05Rik-275	939	No protein	-	lncRNA	-
ENSMUST00000242056.2	E230029C05Rik-212	938	No protein	-	lncRNA	-
ENSMUST00000242260.2	E230029C05Rik-213	916	No protein	-	lncRNA	-
ENSMUST00000245736.1	E230029C05Rik-243	913	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000208547.4	E230029C05Rik-206	911	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000208266.4	E230029C05Rik-204	910	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000293491.1	E230029C05Rik-281	910	No protein	-	lncRNA	-
ENSMUST00000293463.1	E230029C05Rik-253	909	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293484.1	E230029C05Rik-274	906	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293501.1	E230029C05Rik-291	903	No protein	-	lncRNA	-
ENSMUST00000293478.1	E230029C05Rik-268	901	No protein	-	lncRNA	-
ENSMUST00000293495.1	E230029C05Rik-285	900	No protein	-	lncRNA	-
ENSMUST00000293483.1	E230029C05Rik-273	899	No protein	-	lncRNA	-
ENSMUST00000293490.1	E230029C05Rik-280	898	No protein	-	lncRNA	-
ENSMUST00000241642.2	E230029C05Rik-210	897	No protein	-	lncRNA	-
ENSMUST00000241837.2	E230029C05Rik-211	896	No protein	-	lncRNA	-
ENSMUST00000293507.1	E230029C05Rik-297	896	No protein	-	lncRNA	-
ENSMUST00000293569.1	E230029C05Rik-359	896	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293502.1	E230029C05Rik-292	887	No protein	-	lncRNA	-
ENSMUST00000242996.2	E230029C05Rik-216	886	No protein	-	lncRNA	-
ENSMUST00000293494.1	E230029C05Rik-284	884	No protein	-	lncRNA	-
ENSMUST00000243683.2	E230029C05Rik-222	882	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245358.2	E230029C05Rik-238	881	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293525.1	E230029C05Rik-315	879	No protein	-	lncRNA	-
ENSMUST00000243486.1	E230029C05Rik-220	874	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293562.1	E230029C05Rik-352	872	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293499.1	E230029C05Rik-289	868	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293526.1	E230029C05Rik-316	868	No protein	-	lncRNA	-
ENSMUST00000293550.1	E230029C05Rik-340	864	No protein	-	lncRNA	-
ENSMUST00000245590.1	E230029C05Rik-241	863	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293533.1	E230029C05Rik-323	858	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243389.2	E230029C05Rik-217	854	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293479.1	E230029C05Rik-269	854	No protein	-	lncRNA	-
ENSMUST00000243940.1	E230029C05Rik-225	851	No protein	-	lncRNA	-
ENSMUST00000293500.1	E230029C05Rik-290	849	No protein	-	lncRNA	-
ENSMUST00000293524.1	E230029C05Rik-314	847	No protein	-	lncRNA	-
ENSMUST00000241308.2	E230029C05Rik-208	846	No protein	-	lncRNA	-
ENSMUST00000245464.2	E230029C05Rik-240	843	No protein	-	lncRNA	-
ENSMUST00000245770.1	E230029C05Rik-245	842	No protein	-	lncRNA	-
ENSMUST00000293538.1	E230029C05Rik-328	836	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293496.1	E230029C05Rik-286	832	No protein	-	lncRNA	-
ENSMUST00000241636.2	E230029C05Rik-209	827	No protein	-	lncRNA	-
ENSMUST00000245840.2	E230029C05Rik-246	821	No protein	-	lncRNA	-
ENSMUST00000242520.2	E230029C05Rik-214	818	No protein	-	lncRNA	-
ENSMUST00000245031.2	E230029C05Rik-235	817	No protein	-	lncRNA	-
ENSMUST00000293536.1	E230029C05Rik-326	815	No protein	-	lncRNA	-
ENSMUST00000293520.1	E230029C05Rik-310	811	No protein	-	lncRNA	-
ENSMUST00000293481.1	E230029C05Rik-271	809	No protein	-	lncRNA	-
ENSMUST00000293512.1	E230029C05Rik-302	808	No protein	-	lncRNA	-
ENSMUST00000293509.1	E230029C05Rik-299	804	No protein	-	lncRNA	-
ENSMUST00000293543.1	E230029C05Rik-333	800	No protein	-	lncRNA	-
ENSMUST00000293473.1	E230029C05Rik-263	797	No protein	-	lncRNA	-
ENSMUST00000293557.1	E230029C05Rik-347	796	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293514.1	E230029C05Rik-304	787	No protein	-	lncRNA	-
ENSMUST00000293563.1	E230029C05Rik-353	786	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293508.1	E230029C05Rik-298	785	No protein	-	lncRNA	-
ENSMUST00000293503.1	E230029C05Rik-293	780	No protein	-	lncRNA	-
ENSMUST00000293568.1	E230029C05Rik-358	780	No protein	-	lncRNA	-
ENSMUST00000293474.1	E230029C05Rik-264	779	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293532.1	E230029C05Rik-322	777	No protein	-	lncRNA	-
ENSMUST00000293570.1	E230029C05Rik-360	770	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245700.2	E230029C05Rik-242	761	No protein	-	lncRNA	-
ENSMUST00000293469.1	E230029C05Rik-259	761	No protein	-	lncRNA	-
ENSMUST00000242807.1	E230029C05Rik-215	758	No protein	-	lncRNA	-
ENSMUST00000293471.1	E230029C05Rik-261	755	No protein	-	lncRNA	-
ENSMUST00000293527.1	E230029C05Rik-317	754	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293552.1	E230029C05Rik-342	751	No protein	-	lncRNA	-
ENSMUST00000293513.1	E230029C05Rik-303	748	No protein	-	lncRNA	-
ENSMUST00000293537.1	E230029C05Rik-327	747	No protein	-	lncRNA	-
ENSMUST00000243658.2	E230029C05Rik-221	740	No protein	-	lncRNA	-
ENSMUST00000293511.1	E230029C05Rik-301	739	No protein	-	lncRNA	-
ENSMUST00000293528.1	E230029C05Rik-318	738	No protein	-	lncRNA	-
ENSMUST00000293487.1	E230029C05Rik-277	735	No protein	-	lncRNA	-
ENSMUST00000293517.1	E230029C05Rik-307	734	No protein	-	lncRNA	-
ENSMUST00000293518.1	E230029C05Rik-308	734	No protein	-	lncRNA	-
ENSMUST00000293489.1	E230029C05Rik-279	730	No protein	-	lncRNA	-
ENSMUST00000245269.2	E230029C05Rik-237	727	No protein	-	lncRNA	-
ENSMUST00000293534.1	E230029C05Rik-324	724	No protein	-	lncRNA	-
ENSMUST00000293553.1	E230029C05Rik-343	721	No protein	-	lncRNA	-
ENSMUST00000293492.1	E230029C05Rik-282	710	No protein	-	lncRNA	-
ENSMUST00000293466.1	E230029C05Rik-256	708	No protein	-	lncRNA	-
ENSMUST00000293498.1	E230029C05Rik-288	706	No protein	-	lncRNA	-
ENSMUST00000293504.1	E230029C05Rik-294	706	No protein	-	lncRNA	-
ENSMUST00000293515.1	E230029C05Rik-305	699	No protein	-	lncRNA	-
ENSMUST00000293519.1	E230029C05Rik-309	699	No protein	-	lncRNA	-
ENSMUST00000293472.1	E230029C05Rik-262	698	No protein	-	lncRNA	-
ENSMUST00000293565.1	E230029C05Rik-355	697	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000244169.1	E230029C05Rik-228	695	No protein	-	lncRNA	-
ENSMUST00000293555.1	E230029C05Rik-345	692	No protein	-	lncRNA	-
ENSMUST00000293465.1	E230029C05Rik-255	688	No protein	-	lncRNA	-
ENSMUST00000293468.1	E230029C05Rik-258	688	No protein	-	lncRNA	-
ENSMUST00000293522.1	E230029C05Rik-312	688	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293521.1	E230029C05Rik-311	684	No protein	-	lncRNA	-
ENSMUST00000243851.2	E230029C05Rik-224	682	No protein	-	lncRNA	-
ENSMUST00000244020.2	E230029C05Rik-227	677	No protein	-	lncRNA	-
ENSMUST00000293551.1	E230029C05Rik-341	672	No protein	-	lncRNA	-
ENSMUST00000293540.1	E230029C05Rik-330	665	No protein	-	lncRNA	-
ENSMUST00000293488.1	E230029C05Rik-278	664	No protein	-	lncRNA	-
ENSMUST00000244829.2	E230029C05Rik-233	654	No protein	-	lncRNA	-
ENSMUST00000293558.1	E230029C05Rik-348	651	No protein	-	lncRNA	-
ENSMUST00000293531.1	E230029C05Rik-321	647	No protein	-	lncRNA	-
ENSMUST00000244541.2	E230029C05Rik-230	641	No protein	-	lncRNA	-
ENSMUST00000293505.1	E230029C05Rik-295	635	No protein	-	lncRNA	-
ENSMUST00000293535.1	E230029C05Rik-325	627	No protein	-	lncRNA	-
ENSMUST00000293510.1	E230029C05Rik-300	624	No protein	-	lncRNA	-
ENSMUST00000293523.1	E230029C05Rik-313	614	No protein	-	lncRNA	-
ENSMUST00000243790.2	E230029C05Rik-223	611	No protein	-	lncRNA	-
ENSMUST00000293464.1	E230029C05Rik-254	607	No protein	-	lncRNA	-
ENSMUST00000293475.1	E230029C05Rik-265	607	No protein	-	lncRNA	-
ENSMUST00000293493.1	E230029C05Rik-283	587	No protein	-	lncRNA	-
ENSMUST00000243451.1	E230029C05Rik-218	585	No protein	-	lncRNA	-
ENSMUST00000293530.1	E230029C05Rik-320	574	No protein	-	lncRNA	-
ENSMUST00000293467.1	E230029C05Rik-257	564	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293470.1	E230029C05Rik-260	538	No protein	-	lncRNA	-
ENSMUST00000293567.1	E230029C05Rik-357	535	No protein	-	lncRNA	-
ENSMUST00000293541.1	E230029C05Rik-331	533	No protein	-	lncRNA	-
ENSMUST00000293564.1	E230029C05Rik-354	519	No protein	-	lncRNA	-
ENSMUST00000293572.1	E230029C05Rik-362	517	No protein	-	lncRNA	-
ENSMUST00000244876.2	E230029C05Rik-234	509	No protein	-	lncRNA	-
ENSMUST00000293529.1	E230029C05Rik-319	508	No protein	-	lncRNA	-
ENSMUST00000293486.1	E230029C05Rik-276	470	No protein	-	lncRNA	-
ENSMUST00000293542.1	E230029C05Rik-332	468	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293539.1	E230029C05Rik-329	442	No protein	-	lncRNA	-
ENSMUST00000293556.1	E230029C05Rik-346	437	No protein	-	lncRNA	-
ENSMUST00000293566.1	E230029C05Rik-356	422	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000244375.2	E230029C05Rik-229	390	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000246996.1	E230029C05Rik-247	334	No protein	-	lncRNA	-
ENSMUST00000293476.1	E230029C05Rik-266	268	No protein	-	lncRNA	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 911 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000208547.4

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000208547.4 E230029C05Rik-206

Summary

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Transcript: ENSMUST00000208547.4 E230029C05Rik-206

Summary

About Us

Get help

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