Transcript: ENSMUST00000206425.2 Atoh8-202

Description

atonal bHLH transcription factor 8 [Source:MGI Symbol;Acc:MGI:1918343]

Gene Synonyms

4933425C05Rik, Math6, bHLHa21, okadin

Location

Chromosome 6: 72,183,161-72,211,521 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 2034 variant alleles and maps to 135 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000037621.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000042646.8	Atoh8-201	2355	322aa	ENSMUSP00000036981.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS39511	Q99NA2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000206425.2	Atoh8-202	1467	114aa	ENSMUSP00000145790.2	Nonsense mediated decay		A0A0U1RP16	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000206553.2	Atoh8-203	659	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,467 bps, Translation length: 114 residues

Transcript Support Level (TSL)

TSL:1

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000206425.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000206425.2 Atoh8-202

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Transcript: ENSMUST00000206425.2 Atoh8-202

Summary

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