Transcript: ENSMUST00000202642.5 Pramel42-202

Description

PRAME like 42 [Source:MGI Symbol;Acc:MGI:3781318]

Gene Synonyms

Gm3139

Location

Chromosome 5: 94,674,163-94,686,224 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 48 variant alleles and maps to 1033 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000095074.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000202642.5	Pramel42-202	2042	481aa	ENSMUSP00000144005.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57361	J3QK78	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000201138.4	Pramel42-201	1303	189aa	ENSMUSP00000144523.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0J9YV74	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 2,042 bps, Translation length: 481 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS57361

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000202642.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000202642.5 Pramel42-202

Summary

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Transcript: ENSMUST00000202642.5 Pramel42-202

Summary

About Us

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