Transcript: ENSMUST00000199459.2 Igkj5-202

Description

immunoglobulin kappa joining 5 [Source:MGI Symbol;Acc:MGI:1316738]

Location

Chromosome 6: 70,700,870-70,700,907 forward strand.

About this transcript

This transcript has 1 exon, is associated with 432 variant alleles and maps to 39 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000076608.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000199459.2	Igkj5-202	38	13aa	ENSMUSP00000142377.2	Joining chain immunoglobulin gene that undergoes somatic recombination before transcriptionIG J gene		A0A0G2JDI1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000103409.2	Igkj5-201	42	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 38 bps, Translation length: 13 residues

Transcript Support Level (TSL)

TSL:NA

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSMUST00000199459.2

Type

IG J gene

Annotation Method

Immunoglobulin (Ig) and T-cell receptor (TcR) annotation imported from the manually curated IG gene set from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000199459.2 Igkj5-202

Summary

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Transcript: ENSMUST00000199459.2 Igkj5-202

Summary

About Us

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