Transcript: ENSMUST00000198712.7 A230001M10Rik-203

Description

RIKEN cDNA A230001M10 gene [Source:MGI Symbol;Acc:MGI:2443043]

Location

Chromosome 3: 102,169,688-102,196,090 forward strand.

About this transcript

This transcript has 4 exons, is associated with 2246 variant alleles and maps to 80 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000105891.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000196720.5	A230001M10Rik-202	1307	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000242220.1	A230001M10Rik-204	2088	No protein	-	lncRNA	-
ENSMUST00000323920.1	A230001M10Rik-214	1946	No protein	-	lncRNA	-
ENSMUST00000243835.1	A230001M10Rik-206	1943	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000323915.1	A230001M10Rik-209	1925	No protein	-	lncRNA	-
ENSMUST00000198712.7	A230001M10Rik-203	1900	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000323916.1	A230001M10Rik-210	1814	No protein	-	lncRNA	-
ENSMUST00000323919.1	A230001M10Rik-213	1746	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000196659.3	A230001M10Rik-201	1703	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000323917.1	A230001M10Rik-211	1571	No protein	-	lncRNA	-
ENSMUST00000323921.1	A230001M10Rik-215	1562	No protein	-	lncRNA	-
ENSMUST00000323925.1	A230001M10Rik-219	1439	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000323922.1	A230001M10Rik-216	1431	No protein	-	lncRNA	-
ENSMUST00000323928.1	A230001M10Rik-222	1404	No protein	-	lncRNA	-
ENSMUST00000323926.1	A230001M10Rik-220	1365	No protein	-	lncRNA	-
ENSMUST00000323927.1	A230001M10Rik-221	1322	No protein	-	lncRNA	-
ENSMUST00000323924.1	A230001M10Rik-218	1278	No protein	-	lncRNA	-
ENSMUST00000323923.1	A230001M10Rik-217	1209	No protein	-	lncRNA	-
ENSMUST00000323918.1	A230001M10Rik-212	1175	No protein	-	lncRNA	-
ENSMUST00000323929.1	A230001M10Rik-223	1162	No protein	-	lncRNA	-
ENSMUST00000242885.2	A230001M10Rik-205	1106	No protein	-	lncRNA	-
ENSMUST00000323930.1	A230001M10Rik-224	1101	No protein	-	lncRNA	-
ENSMUST00000323934.1	A230001M10Rik-228	1058	No protein	-	lncRNA	-
ENSMUST00000323936.1	A230001M10Rik-230	1050	No protein	-	lncRNA	-
ENSMUST00000323938.1	A230001M10Rik-232	899	No protein	-	lncRNA	-
ENSMUST00000323931.1	A230001M10Rik-225	884	No protein	-	lncRNA	-
ENSMUST00000323933.1	A230001M10Rik-227	859	No protein	-	lncRNA	-
ENSMUST00000323932.1	A230001M10Rik-226	852	No protein	-	lncRNA	-
ENSMUST00000243953.2	A230001M10Rik-207	784	No protein	-	lncRNA	-
ENSMUST00000323937.1	A230001M10Rik-231	743	No protein	-	lncRNA	-
ENSMUST00000323935.1	A230001M10Rik-229	733	No protein	-	lncRNA	-
ENSMUST00000298723.1	A230001M10Rik-208	635	No protein	-	lncRNA	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,900 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000198712.7

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000198712.7 A230001M10Rik-203

Summary

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Transcript: ENSMUST00000198712.7 A230001M10Rik-203

Summary

About Us

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