Transcript: ENSMUST00000195764.2 Pcdhgb8-201

Description

protocadherin gamma subfamily B, 8 [Source:MGI Symbol;Acc:MGI:1935200]

Location

Chromosome 18: 37,894,854-37,974,923 forward strand.

About this transcript

This transcript has 4 exons, is associated with 5047 variant alleles and maps to 236 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000103081.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000195764.2	Pcdhgb8-201	4615	931aa	ENSMUSP00000142272.2	Protein coding LoF	CCDS79634	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,615 bps, Translation length: 931 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS79634

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000195764.2

Type

Protein coding LoF

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000195764.2 Pcdhgb8-201

Summary

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Transcript: ENSMUST00000195764.2 Pcdhgb8-201

Summary

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