Transcript: ENSMUST00000192565.2 Sft2d2-203

Description

SFT2 domain containing 2 [Source:MGI Symbol;Acc:MGI:1917362]

Gene Synonyms

2010005O13Rik, cI-45

Location

Chromosome 1: 165,006,807-165,021,886 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 1 domain and feature, is associated with 1653 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000040848.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000043338.10	Sft2d2-201	5535	159aa	ENSMUSP00000043537.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15440	Q8VD57	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000192185.6	Sft2d2-202	3798	65aa	ENSMUSP00000141801.2	Nonsense mediated decay		A0A0A6YX21	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000192565.2	Sft2d2-203	680	114aa	ENSMUSP00000142241.2	Nonsense mediated decay		A0A0A6YY20	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 9, Coding exons: 4, Transcript length: 680 bps, Translation length: 114 residues

Transcript Support Level (TSL)

TSL:3

Version

ENSMUST00000192565.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000192565.2 Sft2d2-203

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Transcript: ENSMUST00000192565.2 Sft2d2-203

Summary

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