Transcript: ENSMUST00000189230.2 Hoxaas2-203

Description

Hoxa cluster antisense RNA 2 [Source:MGI Symbol;Acc:MGI:1913890]

Gene Synonyms

2810043O09Rik, 5730446D14Rik

Location

Chromosome 6: 52,143,498-52,146,544 forward strand.

About this transcript

This transcript has 1 exon, is associated with 488 variant alleles and maps to 122 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000056445.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000189230.2	Hoxaas2-203	3047	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000155922.2	Hoxaas2-202	1567	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000114435.2	Hoxaas2-201	1055	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 3,047 bps,

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000189230.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000189230.2 Hoxaas2-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000189230.2 Hoxaas2-203

Summary

About Us

Get help

Our sister sites

Follow us