Transcript: ENSMUST00000188815.2 Lama3-202

Description

laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]

Gene Synonyms

[a]3B, nicein, 150kDa

Location

Chromosome 18: 12,637,256-12,716,070 forward strand.

About this transcript

This transcript has 38 exons, is annotated with 59 domains and features, is associated with 5080 variant alleles and maps to 400 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024421.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000092070.13	Lama3-201	10548	3330aa	ENSMUSP00000089703.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50222	Q61789	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000188815.2	Lama3-202	5551	1724aa	ENSMUSP00000140104.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS84360	Q61789-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 38, Coding exons: 38, Transcript length: 5,551 bps, Translation length: 1,724 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q61789

CCDS

This transcript is a member of the Mouse CCDS set: CCDS84360

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000188815.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000188815.2 Lama3-202

Summary

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Transcript: ENSMUST00000188815.2 Lama3-202

Summary

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