Transcript: ENSMUST00000181898.4 Gm19872-204

Description

predicted gene, 19872 [Source:MGI Symbol;Acc:MGI:5012057]

Location

Chromosome 8: 88,199,749-88,230,617 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1928 variant alleles and maps to 58 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000098295.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000210935.2	Gm19872-210	1125	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000180700.10	Gm19872-201	2375	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000245807.1	Gm19872-229	1837	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000244637.2	Gm19872-223	1665	No protein	-	lncRNA	-
ENSMUST00000244707.2	Gm19872-225	1601	No protein	-	lncRNA	-
ENSMUST00000241157.1	Gm19872-213	1574	No protein	-	lncRNA	-
ENSMUST00000244646.1	Gm19872-224	1531	No protein	-	lncRNA	-
ENSMUST00000180806.11	Gm19872-202	1513	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000244098.2	Gm19872-220	1499	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000211631.3	Gm19872-212	1461	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000269677.1	Gm19872-243	1363	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000181898.4	Gm19872-204	1356	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000269705.1	Gm19872-271	1341	No protein	-	lncRNA	-
ENSMUST00000269712.1	Gm19872-278	1317	No protein	-	lncRNA	-
ENSMUST00000269706.1	Gm19872-272	1286	No protein	-	lncRNA	-
ENSMUST00000269713.1	Gm19872-279	1267	No protein	-	lncRNA	-
ENSMUST00000241503.2	Gm19872-214	1219	No protein	-	lncRNA	-
ENSMUST00000183446.3	Gm19872-208	1195	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000269697.1	Gm19872-263	1127	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269673.1	Gm19872-239	1126	No protein	-	lncRNA	-
ENSMUST00000269709.1	Gm19872-275	1114	No protein	-	lncRNA	-
ENSMUST00000269715.1	Gm19872-281	1100	No protein	-	lncRNA	-
ENSMUST00000244310.1	Gm19872-221	1030	No protein	-	lncRNA	-
ENSMUST00000269695.1	Gm19872-261	1020	No protein	-	lncRNA	-
ENSMUST00000246072.2	Gm19872-231	1019	No protein	-	lncRNA	-
ENSMUST00000269678.1	Gm19872-244	1018	No protein	-	lncRNA	-
ENSMUST00000269698.1	Gm19872-264	1001	No protein	-	lncRNA	-
ENSMUST00000182650.9	Gm19872-206	978	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000245019.2	Gm19872-227	966	No protein	-	lncRNA	-
ENSMUST00000269692.1	Gm19872-258	951	No protein	-	lncRNA	-
ENSMUST00000269710.1	Gm19872-276	946	No protein	-	lncRNA	-
ENSMUST00000246251.2	Gm19872-232	944	No protein	-	lncRNA	-
ENSMUST00000269696.1	Gm19872-262	914	No protein	-	lncRNA	-
ENSMUST00000242724.2	Gm19872-216	898	No protein	-	lncRNA	-
ENSMUST00000244830.2	Gm19872-226	897	No protein	-	lncRNA	-
ENSMUST00000269687.1	Gm19872-253	897	No protein	-	lncRNA	-
ENSMUST00000269669.1	Gm19872-235	821	No protein	-	lncRNA	-
ENSMUST00000243242.2	Gm19872-217	798	No protein	-	lncRNA	-
ENSMUST00000269686.1	Gm19872-252	792	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269708.1	Gm19872-274	778	No protein	-	lncRNA	-
ENSMUST00000269693.1	Gm19872-259	767	No protein	-	lncRNA	-
ENSMUST00000269691.1	Gm19872-257	755	No protein	-	lncRNA	-
ENSMUST00000246314.2	Gm19872-233	751	No protein	-	lncRNA	-
ENSMUST00000181159.10	Gm19872-203	749	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000269671.1	Gm19872-237	744	No protein	-	lncRNA	-
ENSMUST00000211487.4	Gm19872-211	741	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000242063.2	Gm19872-215	730	No protein	-	lncRNA	-
ENSMUST00000269707.1	Gm19872-273	717	No protein	-	lncRNA	-
ENSMUST00000243777.2	Gm19872-218	708	No protein	-	lncRNA	-
ENSMUST00000243984.2	Gm19872-219	693	No protein	-	lncRNA	-
ENSMUST00000269704.1	Gm19872-270	676	No protein	-	lncRNA	-
ENSMUST00000269676.1	Gm19872-242	674	No protein	-	lncRNA	-
ENSMUST00000269668.1	Gm19872-234	671	No protein	-	lncRNA	-
ENSMUST00000269670.1	Gm19872-236	667	No protein	-	lncRNA	-
ENSMUST00000269694.1	Gm19872-260	655	No protein	-	lncRNA	-
ENSMUST00000182174.10	Gm19872-205	651	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000269682.1	Gm19872-248	649	No protein	-	lncRNA	-
ENSMUST00000244580.2	Gm19872-222	629	No protein	-	lncRNA	-
ENSMUST00000270729.1	Gm19872-282	624	No protein	-	lncRNA	-
ENSMUST00000269675.1	Gm19872-241	611	No protein	-	lncRNA	-
ENSMUST00000270731.1	Gm19872-284	594	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245357.2	Gm19872-228	589	No protein	-	lncRNA	-
ENSMUST00000269683.1	Gm19872-249	584	No protein	-	lncRNA	-
ENSMUST00000269711.1	Gm19872-277	569	No protein	-	lncRNA	-
ENSMUST00000182758.4	Gm19872-207	561	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000269688.1	Gm19872-254	535	No protein	-	lncRNA	-
ENSMUST00000269702.1	Gm19872-268	535	No protein	-	lncRNA	-
ENSMUST00000270730.1	Gm19872-283	533	No protein	-	lncRNA	-
ENSMUST00000269679.1	Gm19872-245	533	No protein	-	lncRNA	-
ENSMUST00000269681.1	Gm19872-247	521	No protein	-	lncRNA	-
ENSMUST00000246044.2	Gm19872-230	515	No protein	-	lncRNA	-
ENSMUST00000269689.1	Gm19872-255	510	No protein	-	lncRNA	-
ENSMUST00000269680.1	Gm19872-246	508	No protein	-	lncRNA	-
ENSMUST00000269690.1	Gm19872-256	507	No protein	-	lncRNA	-
ENSMUST00000269700.1	Gm19872-266	504	No protein	-	lncRNA	-
ENSMUST00000269703.1	Gm19872-269	499	No protein	-	lncRNA	-
ENSMUST00000269672.1	Gm19872-238	494	No protein	-	lncRNA	-
ENSMUST00000269714.1	Gm19872-280	490	No protein	-	lncRNA	-
ENSMUST00000269685.1	Gm19872-251	468	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269684.1	Gm19872-250	464	No protein	-	lncRNA	-
ENSMUST00000269701.1	Gm19872-267	453	No protein	-	lncRNA	-
ENSMUST00000269699.1	Gm19872-265	425	No protein	-	lncRNA	-
ENSMUST00000269674.1	Gm19872-240	367	No protein	-	lncRNA	-
ENSMUST00000210170.2	Gm19872-209	171	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,356 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000181898.4

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000181898.4 Gm19872-204

Summary

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Transcript: ENSMUST00000181898.4 Gm19872-204

Summary

About Us

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