Transcript: ENSMUST00000172391.4 Vmn2r23-201

Description

vomeronasal 2, receptor 23 [Source:MGI Symbol;Acc:MGI:3646826]

Gene Synonyms

EG435916

Location

Chromosome 6: 123,679,629-123,724,616 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 62 domains and features, is associated with 4101 variant alleles and maps to 185 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091620.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000172391.4	Vmn2r23-201	8119	849aa	ENSMUSP00000126682.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51901	E9PXI5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233267.2	Vmn2r23-203	8295	188aa	ENSMUSP00000156872.2	Nonsense mediated decay		A0A3B2WBG5	-
ENSMUST00000233008.2	Vmn2r23-202	8225	180aa	ENSMUSP00000156548.2	Nonsense mediated decay		A0A3B2WCJ3	-
ENSMUST00000233395.2	Vmn2r23-204	11646	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000233414.2	Vmn2r23-205	7223	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 8,119 bps, Translation length: 849 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS51901

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000172391.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not best-in-genome evidence [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000172391.4 Vmn2r23-201

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Transcript: ENSMUST00000172391.4 Vmn2r23-201

Summary

About Us

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