Transcript: ENSMUST00000171213.3 Vmn2r69-201

Description

vomeronasal 2, receptor 69 [Source:MGI Symbol;Acc:MGI:3761311]

Location

Chromosome 7: 85,043,034-85,065,128 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 53 domains and features, is associated with 2146 variant alleles and maps to 152 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091006.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000171213.3	Vmn2r69-201	15347	850aa	ENSMUSP00000132726.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52291	G3XA45	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233336.2	Vmn2r69-203	13051	553aa	ENSMUSP00000156451.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W7D5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000233859.2	Vmn2r69-204	15979	571aa	ENSMUSP00000156696.2	Nonsense mediated decay		A0A3B2WCU6	-
ENSMUST00000207880.3	Vmn2r69-202	15500	167aa	ENSMUSP00000156625.2	Nonsense mediated decay		A0A3B2W7N2	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 15,347 bps, Translation length: 850 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS52291

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000171213.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not best-in-genome evidence [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000171213.3 Vmn2r69-201

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Transcript: ENSMUST00000171213.3 Vmn2r69-201

Summary

About Us

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