Transcript: ENSMUST00000171190.4 2900005J15Rik-202

Description

RIKEN cDNA 2900005J15 gene [Source:MGI Symbol;Acc:MGI:1914511]

Location

Chromosome 5: 25,305,840-25,308,012 forward strand.

About this transcript

This transcript has 1 exon, is associated with 650 variant alleles and maps to 101 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000043833.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000128569.4	2900005J15Rik-201	2084	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000171190.4	2900005J15Rik-202	2173	No protein	-	lncRNA	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000380785.1	2900005J15Rik-206	2094	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000380789.1	2900005J15Rik-210	1983	No protein	-	lncRNA	-
ENSMUST00000246929.1	2900005J15Rik-205	1660	No protein	-	lncRNA	-
ENSMUST00000380786.1	2900005J15Rik-207	1506	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245668.1	2900005J15Rik-204	1479	No protein	-	lncRNA	-
ENSMUST00000380788.1	2900005J15Rik-209	1316	No protein	-	lncRNA	-
ENSMUST00000244428.2	2900005J15Rik-203	1245	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000380791.1	2900005J15Rik-212	1194	No protein	-	lncRNA	-
ENSMUST00000380790.1	2900005J15Rik-211	1180	No protein	-	lncRNA	-
ENSMUST00000380787.1	2900005J15Rik-208	1005	No protein	-	lncRNA	-

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 2,173 bps,

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000171190.4

Type

LncRNA

Annotation Method

Long intergenic non-coding RNAs (lincRNAs) were annotated by the Ensembl lincRNA annotation pipeline.

Transcript: ENSMUST00000171190.4 2900005J15Rik-202

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Transcript: ENSMUST00000171190.4 2900005J15Rik-202

Summary

About Us

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