Transcript: ENSMUST00000170419.3 Vmn2r9-201

Description

vomeronasal 2, receptor 9 [Source:MGI Symbol;Acc:MGI:3643093]

Gene Synonyms

EG435864

Location

Chromosome 5: 108,983,152-109,000,467 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 58 domains and features, is associated with 1966 variant alleles and maps to 186 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091624.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000170419.3	Vmn2r9-201	10299	848aa	ENSMUSP00000129520.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51595	K7N6Z8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233835.2	Vmn2r9-204	10236	827aa	ENSMUSP00000156817.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W817	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000233198.2	Vmn2r9-202	7902	848aa	ENSMUSP00000156678.2	Nonsense mediated decay	CCDS51595	K7N6Z8	-
ENSMUST00000233547.2	Vmn2r9-203	7839	827aa	ENSMUSP00000156745.2	Nonsense mediated decay		A0A3B2W817	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 10,299 bps, Translation length: 848 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS51595

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000170419.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not best-in-genome evidence [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000170419.3 Vmn2r9-201

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Transcript: ENSMUST00000170419.3 Vmn2r9-201

Summary

About Us

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