Transcript: ENSMUST00000169934.4 Vsx2-202

Description

visual system homeobox 2 [Source:MGI Symbol;Acc:MGI:88401]

Gene Synonyms

Chx10, Hox-10, Hox10

Location

Chromosome 12: 84,616,614-84,642,231 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 22 domains and features, is associated with 1787 variant alleles and maps to 201 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021239.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000169934.4	Vsx2-202	3249	380aa	ENSMUSP00000131009.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79136	Q6PDC1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000021665.12	Vsx2-201	3270	361aa	ENSMUSP00000021665.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36493	Q61412 Q80WF9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 3,249 bps, Translation length: 380 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS79136

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000169934.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000169934.4 Vsx2-202

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Transcript: ENSMUST00000169934.4 Vsx2-202

Summary

About Us

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