Transcript: ENSMUST00000168779.3 2210408I21Rik-201

Description

RIKEN cDNA 2210408I21 gene [Source:MGI Symbol;Acc:MGI:1919621]

Location

Chromosome 13: 77,283,659-77,761,903 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 9 domains and features, is associated with 21811 variant alleles and maps to 245 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000071252.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000168779.3	2210408I21Rik-201	5051	1272aa	ENSMUSP00000127449.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49316	Q3UPC7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225605.2	2210408I21Rik-202	1539	324aa	ENSMUSP00000153096.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3UPC7-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000225760.2	2210408I21Rik-203	594	198aa	ENSMUSP00000153269.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YD44	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000225960.2	2210408I21Rik-204	522	46aa	ENSMUSP00000153525.2	Nonsense mediated decay		A0A286YDQ9	-
ENSMUST00000225992.2	2210408I21Rik-205	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 5,051 bps, Translation length: 1,272 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3UPC7

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49316

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000168779.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000168779.3 2210408I21Rik-201

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Transcript: ENSMUST00000168779.3 2210408I21Rik-201

Summary

About Us

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