Transcript: ENSMUST00000168722.3 Nsmce2-202

Description

NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase [Source:MGI Symbol;Acc:MGI:1915751]

Gene Synonyms

1110014D18Rik

Location

Chromosome 15: 59,246,096-59,411,513 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 7336 variant alleles and maps to 111 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000059586.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000227173.2	Nsmce2-203	1122	273aa	ENSMUSP00000154811.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BS18	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000168722.3	Nsmce2-202	2679	139aa	ENSMUSP00000128893.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49611	Q91VT1-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000079703.11	Nsmce2-201	1054	247aa	ENSMUSP00000078641.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27498	Q91VT1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,679 bps, Translation length: 139 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q91VT1

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49611

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000168722.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000168722.3 Nsmce2-202

Summary

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Transcript: ENSMUST00000168722.3 Nsmce2-202

Summary

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