Transcript: ENSMUST00000164880.4 Vmn1r61-201

Description

vomeronasal 1 receptor 61 [Source:MGI Symbol;Acc:MGI:3779692]

Gene Synonyms

Gm7186

Location

Chromosome 7: 5,612,827-5,614,488 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 28 domains and features, is associated with 825 variant alleles and maps to 50 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000117863.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000164880.4	Vmn1r61-201	1662	300aa	ENSMUSP00000128012.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51986	W4VSP5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000238042.2	Vmn1r61-204	8706	300aa	ENSMUSP00000157894.2	Nonsense mediated decay	CCDS51986	W4VSP5	-
ENSMUST00000236051.2	Vmn1r61-202	3587	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000238026.2	Vmn1r61-203	7766	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 1,662 bps, Translation length: 300 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS51986

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000164880.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not best-in-genome evidence [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000164880.4 Vmn1r61-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000164880.4 Vmn1r61-201

Summary

About Us

Get help

Our sister sites

Follow us