Transcript: ENSMUST00000162997.3 Gan-202

Description

giant axonal neuropathy [Source:MGI Symbol;Acc:MGI:1890619]

Gene Synonyms

gigaxonin

Location

Chromosome 8: 117,884,876-117,942,736 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 22 domains and features, is associated with 3241 variant alleles and maps to 332 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000052557.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000064488.11	Gan-201	2652	597aa	ENSMUSP00000070168.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40490	Q8CA72	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000162997.3	Gan-202	13461	597aa	ENSMUSP00000124904.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6TZU3	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 13,461 bps, Translation length: 597 residues

Transcript Support Level (TSL)

TSL:1

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000162997.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

3' standard supported extension [Definitions]

Transcript: ENSMUST00000162997.3 Gan-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000162997.3 Gan-202

Summary

About Us

Get help

Our sister sites

Follow us