Transcript: ENSMUST00000151816.3 9930038B18Rik-201

Description

RIKEN cDNA 9930038B18 gene [Source:MGI Symbol;Acc:MGI:2442156]

Location

Chromosome 12: 8,923,187-8,943,473 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1695 variant alleles and maps to 95 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000042976.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000151816.3	9930038B18Rik-201	3966	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000218928.3	9930038B18Rik-202	3343	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000351806.1	9930038B18Rik-203	1072	No protein	-	lncRNA	-
ENSMUST00000351809.1	9930038B18Rik-206	631	No protein	-	lncRNA	-
ENSMUST00000351810.1	9930038B18Rik-207	511	No protein	-	lncRNA	-
ENSMUST00000351808.1	9930038B18Rik-205	444	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000351807.1	9930038B18Rik-204	436	No protein	-	lncRNA	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 3,966 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000151816.3

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000151816.3 9930038B18Rik-201

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Transcript: ENSMUST00000151816.3 9930038B18Rik-201

Summary

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