Transcript: ENSMUST00000150412.4 Pakap-213

Description

paralemmin A kinase anchor protein [Source:MGI Symbol;Acc:MGI:5141924]

Gene Synonyms

53-H12, AF064781, AKAP-KL, Akap2, B230340M18Rik, Gm20459, Palm2, Palm2-Akap2, Palm2Akap2, pEN70

Location

Chromosome 4: 57,637,823-57,894,718 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 32 domains and features, is associated with 14724 variant alleles and maps to 345 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000089945.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSMUST00000150412.4	Pakap-213	5163	1137aa	ENSMUSP00000117466.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7AA26	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000098066.9	Pakap-211	7576	139aa	ENSMUSP00000095674.3	Nonsense mediated decay	G3X9P1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000126465.8	Pakap-212	1333	139aa	ENSMUSP00000130230.2	Nonsense mediated decay	G3X9P1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 5,163 bps, Translation length: 1,137 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000150412.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000150412.4 Pakap-213

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Transcript: ENSMUST00000150412.4 Pakap-213

Summary

About Us

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